Publications in VIVO

Co-author Network

Vasilevsky, Nicole Senior Biocurator

Senior Biocurator for the Ontology Development Group at the Oregon Health & Science University (OHSU) Library, Portland, OR. Assistant Professor at the Helfgott Research Institute, National College of Natural Medicine (NCNM), Portland, OR.

Publications
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selected publications

academic article
- Registered report: A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations. eLife. 5. 2016
- Reproducibility and conflicts in immune epitope data. Immunology. 147:349-354. 2016
- The Resource Identification Initiative: A cultural shift in publishing. The Journal of comparative neurology. 524:8-22. 2016
- Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic efficiency. Genetics in medicine : official journal of the American College of Medical Genetics. 2015
- The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease. American journal of human genetics. 97:111-124. 2015
- The Resource Identification Initiative: A cultural shift in publishing. F1000Research. 2015
- Identifying research resources in biomedical literature should be easy. Frontiers in Neuroinformatics / Front 2nd INCF Congr of Neuro. 8. 2014
- On the reproducibility of science: unique identification of research resources in the biomedical literature. PeerJ. 1:e148. 2013
- Ontology based molecular signatures for immune cell types via gene expression analysis. BMC Bioinformatics. 14:263. 2013
- Dealing with Data: A Case Study on Information and Data Management Literacy. PLoS Biology. 10:e1001339. 2012
- Research resources: curating the new eagle-i discovery system. Database. 2012:bar067-bar067. 2012
- OX40 engagement stabilizes Mxd4 and Mnt protein levels in antigen-stimulated T cells leading to an increase in cell survival. European journal of immunology. 41:1024-1034. 2011
article
conference poster
- Couture Curricula - BD2K Data Science Tailored to Your Needs 2016
dataset
- Enhancing the Human Phenotype Ontology for Use by the Layperson

contributor to

background and literature search role
- On the reproducibility of science: unique identification of research resources in the biomedical literature. PeerJ. e148. 2013
- Enhancing the human phenotype ontology for use by the layperson
data analysis role
- On the reproducibility of science: unique identification of research resources in the biomedical literature. PeerJ. e148. 2013
- Ontology based molecular signatures for immune cell types via gene expression analysis. BMC Bioinformatics. 263. 2013
data collection role
- Identifying research resources in biomedical literature should be easy. Frontiers in Neuroinformatics / Front 2nd INCF Congr of Neuro. 2014
- On the reproducibility of science: unique identification of research resources in the biomedical literature. PeerJ. e148. 2013
- Ontology based molecular signatures for immune cell types via gene expression analysis. BMC Bioinformatics. 263. 2013
data curation role
- The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease. American journal of human genetics. 111-124. 2015
- Identifying research resources in biomedical literature should be easy. Frontiers in Neuroinformatics / Front 2nd INCF Congr of Neuro. 2014
- On the reproducibility of science: unique identification of research resources in the biomedical literature. PeerJ. e148. 2013
data quality assurance role
- Identifying research resources in biomedical literature should be easy. Frontiers in Neuroinformatics / Front 2nd INCF Congr of Neuro. 2014
editing and proofreading role
- Identifying research resources in biomedical literature should be easy. Frontiers in Neuroinformatics / Front 2nd INCF Congr of Neuro. 2014
- On the reproducibility of science: unique identification of research resources in the biomedical literature. PeerJ. e148. 2013
- Ontology based molecular signatures for immune cell types via gene expression analysis. BMC Bioinformatics. 263. 2013
- Enhancing the human phenotype ontology for use by the layperson
- Lions, Tigers, and Gummi Bears: Springing Towards Effective Engagement with Research Data Management
educational material development role
- Lions, Tigers, and Gummi Bears: Springing Towards Effective Engagement with Research Data Management
figure development role
- On the reproducibility of science: unique identification of research resources in the biomedical literature. PeerJ. e148. 2013
project management role
- Lions, Tigers, and Gummi Bears: Springing Towards Effective Engagement with Research Data Management
teaching role
- Lions, Tigers, and Gummi Bears: Springing Towards Effective Engagement with Research Data Management
writing original draft role