selected publications
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academic article
- Concept decompositions for short text clustering by identifying word communities. Pattern recognition. 76:691-703. 2018
- A disease similarity matrix based on the uniqueness of shared genes. BMC Medical Genomics. 10:26. 2017
- Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review.. Drug safety. 40:1075-1089. 2017
- Node Attribute-enhanced Community Detection in Complex Networks. Scientific Reports. 7:2626. 2017
- An Outcome-Weighted Network Model for Characterizing Collaboration. PLoS ONE. 11:e0163861. 2016
- Characterizing Teamwork in Cardiovascular Care Outcomes. Circulation Cardiovascular Quality and Outcomes. 9:670-678. 2016
- Knowledge-based three-body potential for transcription factor binding site prediction.. IET systems biology. 10:23-9. 2016
- Leveraging electronic health record documentation for Failure Mode and Effects Analysis team identification. Journal of the American Medical Informatics Association : JAMIA. ocw083. 2016
- Identification of cancer-related genes and motifs in the human gene regulatory network.. IET systems biology. 9:128-34. 2015
- Network-based prediction and knowledge mining of disease genes. BMC Medical Genomics. 8:S9. 2015
- Network-based prediction and knowledge mining of disease genes. BMC Medical Genomics. 8:S9. 2015
- Visualizing collaborative electronic health record usage for hospitalized patients with heart failure. Journal of the American Medical Informatics Association : JAMIA. 22:299-311. 2015
- A New Exhaustive Method and Strategy for Finding Motifs in ChIP-Enriched Regions. PLoS ONE. 9:e86044. 2014
- A fast weak motif-finding algorithm based on community detection in graphs. BMC Bioinformatics. 14:227. 2013
- Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses. BMC Genomics. 12:570. 2011
- Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets. PLoS Comput Biol. 6:e1000755. 2010
- NAPS: a residue-level nucleic acid-binding prediction server. Nucleic acids research. 38:W431-W435. 2010
- Mining knowledge for the methylation status of CpG islands using alternating decision trees.. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. 2008:3787-90. 2008
- Learning to Translate Sequence and Structure to Function: Identifying DNA Binding and Membrane Binding Proteins. Annals of biomedical engineering. 35:1043-1052. 2007
- Prediction of specific protein-DNA recognition by knowledge-based two-body and three-body interaction potentials.. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference. 2007:5017-20. 2007
- Genomic Sequence of an Otitis Media Isolate of Nontypeable Haemophilus influenzae: Comparative Study with H. influenzae Serotype d, Strain KW20. Journal of bacteriology. 187:4627-4636. 2005
- Genomic Sequence of an Otitis Media Isolate of Nontypeable Haemophilus influenzae: Comparative Study with H. influenzae Serotype d, Strain KW20. Journal of bacteriology. 187:4627-4636. 2005
- Identification of the Iron-Responsive Genes of Neisseria gonorrhoeae by Microarray Analysis in Defined Medium. Journal of bacteriology. 187:4865-4874. 2005
- Identification of the Iron-Responsive Genes of Neisseria gonorrhoeae by Microarray Analysis in Defined Medium. Journal of bacteriology. 187:4865-4874. 2005
- Partial Analysis of the Genomes of Two Nontypeable Haemophilus influenzae Otitis Media Isolates. Infection and immunity. 72:3002-3010. 2004
- Partial Analysis of the Genomes of Two Nontypeable Haemophilus influenzae Otitis Media Isolates. Infection and immunity. 72:3002-3010. 2004
- Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen. Proceedings of the National Academy of Sciences of the United States of America. 99:14434-14439. 2002