selected publications
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academic article
- Data Infrastructures for Estuarine and Coastal Ecological Syntheses. Estuaries and coasts : journal of the Estuarine Research Federation. 39:295-310. 2016
- Lessons learned while building the Deepwater Horizon Database: Toward improved data sharing in coastal science. Computers & geosciences. 87:84-90. 2016
- The influence of droplet size and biodegradation on the transport of subsurface oil droplets during the Deepwater Horizon spill: a model sensitivity study . Environ. Res. Lett.. 10:024016. 2015
- Emerging semantics to link phenotype and environment. PeerJ. 3:e1470. 2015
- Finding Our Way through Phenotypes. PLoS Biology. 13:e1002033. 2015
- A statistical assessment of population trends for data deficient Mexican amphibians. PeerJ. 2:e703. 2014
- Knowledge Extraction and Semantic Annotation of Text from the Encyclopedia of Life. PLoS ONE. 9:e89550. 2014
- Data Conservancy Provenance, Context, and Lineage Services: Key Components for Data Preservation and Curation. Data Science Journal. 12:158-171. 2013
- Synthesis of primary production in the Arctic Ocean: III. Nitrate and phosphate based estimates of net community production. Progress in oceanography. 110:126-150. 2013
- Applications of Natural Language Processing in Biodiversity Science. Advances in bioinformatics. 2012:1-17. 2012
- Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health. Harmful algae. 14:271-300. 2012
- The Taxonomic Significance of Species That Have Only Been Observed Once: The Genus Gymnodinium (Dinoflagellata) as an Example. PLoS ONE. 7:e44015. 2012
- The user's view on biodiversity data sharing — Investigating facts of acceptance and requirements to realize a sustainable use of research data —. Ecological informatics. 11:25-33. 2012
- Transcriptomics and microbial eukaryote diversity: a way forward. Trends in ecology & evolution. 27:651-652. 2012
- Data issues in the life sciences. ZooKeys. 150:15-51. 2011
- Crassostrea virginica grazing on toxic and non-toxic diatoms. Toxicon : official journal of the International Society on Toxinology. 55:570-579. 2010
- Meeting Report: BioSharing at ISMB 2010. Standards in Genomic Sciences. 3:254-258. 2010
- Intra- and interspecies differences in growth and toxicity of Pseudo-nitzschia while using different nitrogen sources. Harmful algae. 8:792-810. 2009
- Distribution, Abundance and Domoic Acid Analysis of the Toxic Diatom Genus Pseudo-nitzschia from the Chesapeake Bay. Estuaries and coasts : journal of the Estuarine Research Federation. 31:664-672. 2008
- “Windows of opportunity” for dinoflagellate blooms: Reduced microzooplankton net growth coupled to eutrophication. Harmful algae. 8:158-166. 2008
- Effect of salinity on the distribution, growth, and toxicity of Karenia spp.. Harmful algae. 5:199-212. 2006
- EFFECT OF SALINITY ON PSEUDO-NITZSCHIA SPECIES (BACILLARIOPHYCEAE) GROWTH AND DISTRIBUTION . Journal of phycology. 41:21-29.
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article
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chapter
- Geoinformatics: Toward an integrative view of Earth as a system. The Web of Geological Sciences: Advances, Impacts, and Interactions. 591-604. 2013
- A Global Census of Marine Microbes. Life in the World's Oceans. 221-245. 2010
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conference paper
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dataset