selected publications
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academic article
- OpenVIVO: Transparency in Scholarship. Frontiers in Research Metrics and Analytics. 2. 2018
- An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database. 2013:bas056-bas056. 2013
- A Unified Anatomy Ontology of the Vertebrate Skeletal System. PLoS ONE. 7:e51070. 2012
- Dealing with Data: A Case Study on Information and Data Management Literacy. PLoS Biology. 10:e1001339. 2012
- Research resources: curating the new eagle-i discovery system. Database. 2012:bar067-bar067. 2012
- Uberon, an integrative multi-species anatomy ontology. Genome Biology / Adv Genome Biol. 13:R5. 2012
- Modularization for the Cell Ontology. Nature Precedings. 2011
- Integrating phenotype ontologies across multiple species. Genome Biology / Adv Genome Biol. 11:R2. 2010
- The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age. Systematic biology. 59:369-383. 2010
- eagle-i: An Ontology-Driven Framework For Biomedical Resource Curation And Discovery. Nature Precedings. 2010
- eagle-i: An Ontology-Driven Framework For Biomedical Resource Curation And Discovery. Nature Precedings. 2010
- Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation. PLoS Biology. 7:e1000247. 2009
- Uberon: towards a comprehensive multi-species anatomy ontology. Nature Precedings. 2009
- Uberon: towards a comprehensive multi-species anatomy ontology. Nature Precedings. 2009
- An F-domain introduced by alternative splicing regulates activity of the zebrafish thyroid hormone receptor α. General and comparative endocrinology. 155:176-189. 2008
- Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish. Journal of experimental zoology. Part B, Molecular and developmental evolution. 308B:655-668. 2007
- OBO-Edit an ontology editor for biologists. Bioinformatics (Oxford, England). 23:2198-2200. 2007
- Phenotype ontologies: the bridge between genomics and evolution. Trends in ecology & evolution. 22:345-350. 2007
- The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucleic acids research. 36:D768-D772. 2007
- Leukaemia inhibitory factor (LIF) is functionally linked to axotrophin and both LIF and axotrophin are linked to regulatory immune tolerance. FEBS letters. 579:609-614. 2005
- Developmental Toxicity of the Dithiocarbamate Pesticide Sodium Metam in Zebrafish. Toxicological Sciences. 81:390-400. 2004
- Slow degeneration of zebrafish Rohon-Beard neurons during programmed cell death. Developmental dynamics : an official publication of the American Association of Anatomists. 229:30-41. 2004
- TRANSPLANTATION TOLERANCE IS LINKED TO STAT3, LIF AND AXOTROPHIN.. Transplantation. 78:14. 2004
- DSCAM: a novel member of the immunoglobulin superfamily maps in a Down syndrome region and is involved in the development of the nervous system. Human Molecular Genetics. 7:227-237. 1998
- In VitroPreselection of Gene-Trapped Embryonic Stem Cell Clones for Characterizing Novel Developmentally Regulated Genes in the Mouse. Developmental biology. 185:201-214. 1997
- Cytoskeletal changes during neurogenesis in cultures of avian neural crest cells. Journal of neurocytology. 25:289-301. 1996
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article
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chapter
- Lost and Found in Behavioral Informatics. International Review of Neurobiology. 1-18. 2012
- Preface. International Review of Neurobiology. xi-xii. 2012
- CARO – The Common Anatomy Reference Ontology. Anatomy Ontologies for Bioinformatics. 327-349.
- Gene Trapping in Embryonic Stem Cells In Vitro to Identify Novel Developmentally Regulated Genes in the Mouse. Developmental Biology Protocols. 297-307.
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collection
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conference poster
- Enhancing SciENcv through semantic research profile integration with the VIVO-ISF ontology 2016
- Who we are and what we contribute: The Open Research Information Framework as a means to understand scholarship 2016
- OpenVIVO: A VIVO anyone can join 2016
- Attribution of Work in the Scholarly Ecosystem 2016
- OpenVIVO: A VIVO anyone can join 2016
- Couture Curricula - BD2K Data Science Tailored to Your Needs 2016
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slideshow
- Curation Innovation- Data integrator and standards role 2016
- Phenopackets: Making phenotype profiles FAIR++ for disease diagnosis and discovery 2016
- An ecosystem of contributions 2016
- Getting More From Your VIVO 2016
- Getting More From Your VIVO: Generating Reports and Functional Datasets For Analysis 2015
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working paper